Rachel Warnock

Journal Articles

• Matzig, D.N., Marwick, B., Riede, F., & Warnock, R. (2024). A macroevolutionary analysis of European Late Upper Palaeolithic stone tool shape using a Bayesian phylodynamic framework. Royal Society Open Science, 11(8). https://doi.org/10.1098/rsos.240321
• Calderón del Cid, C., Hauffe, T., Carrillo, J.D., May, M.R., Warnock, R., & Silvestro, D. (2024). Challenges in estimating species' age from phylogenetic trees. Global Ecology and Biogeography. https://doi.org/10.1111/geb.13890
• Chambe, T., Warnock, R., & Barido-Sottani, J. (2024). The FossilSimShiny app for simulating under the fossilized birth-death process and plotting the results. Paleobiology. https://doi.org/10.1017/pab.2024.34
• Smith, J.A., Raja, N.B., Clements, T., Dimitrijevic, D., Dowding, E., Dunne, E.,... Kocsis, Á. (2023). Increasing the equitability of data citation in paleontology: capacity building for the big data future. Paleobiology. https://doi.org/10.1017/pab.2023.33
• Barido-Sottani, J., Pohle, A., De Baets, K., Murdock, D., & Warnock, R. (2023). Putting the F into FBD analysis: tree constraints or morphological data? Palaeontology, 66(6). https://doi.org/10.1111/pala.12679
• Pohle, A., Kroeger, B., Warnock, R., King, A.H., Evans, D.H., Aubrechtova, M.,... Klug, C. (2022). Early cephalopod evolution clarified through Bayesian phylogenetic inference. BMC Biology, 20(1). https://doi.org/10.1186/s12915-022-01284-5
• Giles, S., Feilich, K., Warnock, R., Pierce, S.E., & Friedman, M. (2022). A Late Devonian actinopterygian suggests high lineage survivorship across the end-Devonian mass extinction. Nature Ecology & Evolution. https://doi.org/10.1038/s41559-022-01919-4
• Mulvey, L., Warnock, R., & De Baets, K. (2022). Where traditional extinction estimates fall flat: using novel cophylogenetic methods to estimate extinction risk in platyhelminths. Proceedings of the Royal Society of London, Series B: Biological Sciences, 289(1981), 20220432-. https://doi.org/10.1098/rspb.2022.0432
• Andreoletti, J., Zwaans, A., Warnock, R., Aguirre-Fernandez, G., Barido-Sottani, J., Gupta, A.,... Manceau, M. (2022). The Occurrence Birth-Death Process for Combined-Evidence Analysis in Macroevolution and Epidemiology. Systematic Biology. https://doi.org/10.1093/sysbio/syac037
• Orr, R.J., Martino, E.D., Ramsfjell, M.H., Gordon, D.P., Berning, B., Chowdhury, I.,... Liow, L.H. (2022). Paleozoic origins of cheilostome bryozoans and their parental care inferred by a new genome-skimmed phylogeny. Science Advances, 8(13), eabm7452-. https://doi.org/10.1126/sciadv.abm7452
• Wright, A.M., Bapst, D.W., Barido-Sottani, J., & Warnock, R. (2022). Integrating Fossil Observations Into Phylogenetics Using the Fossilized Birth-Death Model. Annual Review of Ecology Evolution and Systematics, 53, 251-273. https://doi.org/10.1146/annurev-ecolsys-102220-030855
• Barido-Sottani, J., Saupe, E.E., Smiley, T.M., Soul, L.C., Wright, A.M., & Warnock, R. (2020). Seven rules for simulations in paleobiology. Paleobiology, 46(4), 435-444. https://doi.org/10.1017/pab.2020.30
• Barido-Sottani, J., Van Tiel, N.M.A., Hopkins, M.J., Wright, D.F., Stadler, T., & Warnock, R. (2020). Ignoring Fossil Age Uncertainty Leads to Inaccurate Topology and Divergence Time Estimates in Time Calibrated Tree Inference. Frontiers in Ecology and Evolution, 8. https://doi.org/10.3389/fevo.2020.00183
• Warnock, R.C.M., Heath, T.A., & Stadler, T. (2020). Assessing the impact of incomplete species sampling on estimates of speciation and extinction rates. Paleobiology, 46(2), 137-157. https://doi.org/10.1017/pab.2020.12
• Barido-Sottani, J., Pett, W., O'Reilly, J.E., & Warnock, R.C.M. (2019). FossilSim: An r package for simulating fossil occurrence data under mechanistic models of preservation and recovery. Methods in Ecology and Evolution, 10(6), 835-840. https://doi.org/10.1111/2041-210X.13170
• Barido-Sottani, J., Aguirre-Fernandez, G., Hopkins, M.J., Stadler, T., & Warnock, R.C.M. (2019). Ignoring stratigraphic age uncertainty leads to erroneous estimates of species divergence times under the fossilized birth-death process. Proceedings of the Royal Society of London, Series B: Biological Sciences, 286(1902). https://doi.org/10.1098/rspb.2019.0685
• Eberle, J., Bazzato, E., Fabrizi, S., Rossini, M., Colomba, M., Cillo, D.,... Ahrens, D. (2019). Sex-biased dispersal obscures species boundaries in integrative species delimitation approaches. Systematic Biology, 68(3), 441-459. https://doi.org/10.1093/sysbio/syy072
• Silvestro, D., Warnock, R.C.M., Gavryushkina, A., & Stadler, T. (2018). Closing the gap between palaeontological and neontological speciation and extinction rate estimates. Nature Communications, 9(1). https://dx.doi.org/10.1038/s41467-018-07622-y
• Hopkins, M.J., Bapst, D.W., Simpson, C., & Warnock, R.C.M. (2018). The inseparability of sampling and time and its influence on attempts to unify the molecular and fossil records. Paleobiology, 44(4), 561-574. https://doi.org/10.1017/pab.2018.27
• Stadler, T., Gavryushkina, A., Warnock, R.C.M., Drummond, A.J., & Heath, T.A. (2018). The fossilized birth-death model for the analysis of stratigraphic range data under different speciation modes. Journal of Theoretical Biology, 447, 41-55. https://doi.org/10.1016/j.jtbi.2018.03.005
• Warnock, R.C.M., Yang, Z., & Donoghue, P.C.J. (2017). Testing the molecular clock using mechanistic models of fossil preservation and molecular evolution. Proceedings of the Royal Society of London, Series B: Biological Sciences, 284(1857). https://doi.org/10.1098/rspb.2017.0227
• Eberle, J., Warnock, R.C.M., & Ahrens, D. (2016). Bayesian species delimitation in Pleophylla chafers (Coleoptera) - The importance of prior choice and morphology. BMC Evolutionary Biology, 16(1). https://dx.doi.org/10.1186/s12862-016-0659-3
• Eberle, J., Walbaum, W., Warnock, R.C.M., Fabrizi, S., & Ahrens, D. (2015). Asymmetry in genitalia does not increase the rate of their evolution. Molecular Phylogenetics and Evolution, 93, 180-187. https://dx.doi.org/10.1016/j.ympev.2015.08.005
• Warnock, R.C.M., Parham, J.F., Joyce, W.G., Lyson, T.R., & Donoghue, P.C.J. (2015). Calibration uncertainty in molecular dating analyses: There is no substitute for the prior evaluation of time priors. Proceedings of the Royal Society of London, Series B: Biological Sciences, 282(1798). https://doi.org/10.1098/rspb.2014.1013
• Ksepka, D.T., Parham, J.F., Allman, J.F., Benton, M.J., Carrano, M.T., Cranston, K.A.,... Warnock, R.C.M. (2015). The fossil calibration database-A new resource for divergence dating. Systematic Biology, 64(5), 853-859. https://doi.org/10.1093/sysbio/syv025
• Joyce, W.G., Parham, J.F., Lyson, T.R., Warnock, R.C.M., & Donoghue, P.C.J. (2013). A divergence dating analysis of turtles using fossil calibrations: An example of best practices. Journal of Paleontology, 87(4), 612-634. https://doi.org/10.1666/12-149
• Warnock, R.C.M., Yang, Z., & Donoghue, P.C.J. (2012). Exploring uncertainty in the calibration of the molecular clock. Biology Letters, 8(1), 156-159. https://doi.org/10.1098/rsbl.2011.0710
• Parham, J.F., Donoghue, P.C.J., Bell, C.J., Calway, T.D., Head, J.J., Holroyd, P.A.,... Benton, M.J. (2012). Best practices for justifying fossil calibrations. Systematic Biology, 61(2), 346-359. https://doi.org/10.1093/sysbio/syr107
• Ksepka, D.T., Benton, M.J., Carrano, M.T., Gandolfo, M.A., Head, J.J., Hermsen, E.J.,... Parham, J.F. (2011). Synthesizing and databasing fossil calibrations: Divergence dating and beyond. Biology Letters, 7(6), 801-803. https://doi.org/10.1098/rsbl.2011.0356
• Clarke, J.T., Warnock, R.C.M., & Donoghue, P.C.J. (2011). Establishing a time-scale for plant evolution. New Phytologist, 192(1), 266-301. https://doi.org/10.1111/j.1469-8137.2011.03794.x

Book Contributions

• Warnock, R.C.M. (2015). Molecular clock calibration. In Encyclopedia of Earth Sciences Series. (pp. 576-582). Springer Netherlands.